FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007256329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007256329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506021272
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCCGCCGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT19531580.3859833781849392No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG9483750.18741801036380146TruSeq Adapter, Index 19 (97% over 37bp)
AGGCCCGCCGTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC7988460.15786806685865964No Hit
AGGCCCGCCGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA7586910.1499326297096854No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)