FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007256335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007256335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437855097
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCTCGGCTTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT35555190.8120309719724469No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG25151960.5744357019555262TruSeq Adapter, Index 3 (97% over 35bp)
GATCTCGGCTTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA20678010.47225692110648193No Hit
GATCTCGGCTTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC10416200.23789148673539368No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)