FastQCFastQC Report
Wed 16 Nov 2022
EGAF00007256338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007256338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442257662
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCTCGGCTTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT30190600.6826473025582087No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTTCGCCTGTGTAGATCTC29556500.6683095068684192Illumina Single End PCR Primer 1 (96% over 31bp)
GATCTCGGCTTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA23048700.5211599929273809No Hit
GATCTCGGCTTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC9286780.20998573451509814No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)