FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007256343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007256343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508750104
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTTTGATTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT26147800.5139615656963089No Hit
GTCTTTGATTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14605840.2870926194444572No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTATG9441690.18558600628806948TruSeq Adapter, Index 6 (97% over 35bp)
GTCTTTGATTAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC8917920.17529077497741405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)