FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007256347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007256347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519077143
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTATG47180750.9089352254526067TruSeq Adapter, Index 1 (97% over 35bp)
TATTATGCTTCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT30904880.5953812533795193No Hit
TATTATGCTTCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA22657710.4364998595208805No Hit
TATTATGCTTCGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC7729030.14889944788033174No Hit

[OK]Adapter Content

Adapter graph