FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007256350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007256350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427691675
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCCGCTTTGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18335310.42870392555571724No Hit
TAGCCGCTTTGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14132440.33043523701975264No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGATAGGGTGTAGATCTC7546480.17644673584071982Illumina Single End PCR Primer 1 (96% over 33bp)
TAGCCGCTTTGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC4949710.11573080069889133No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)