FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007256357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007256357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462593777
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAATACAGCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT26107500.5643720537987262No Hit
CTAAATACAGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13977000.3021441423324638No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCTATGATCTCGTATG10522810.22747409332313606TruSeq Adapter, Index 7 (97% over 35bp)
CTAAATACAGCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5984960.12937830765501196No Hit
CTAAATACAGCGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC4722060.10207789716980996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)