FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007256358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007256358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462593777
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAATACAGCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT23074140.4987991872618727No Hit
CTAAATACAGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14102720.30486186155504635No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTAAGATTAGTGTAGATCTC12300640.26590586842243663Illumina Single End PCR Primer 1 (96% over 31bp)
CTAAATACAGCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5183710.11205749531732244No Hit
CTAAATACAGCGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC4850050.10484468752375803No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)