FastQCFastQC Report
Wed 16 Nov 2022
EGAF00007256366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007256366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511979454
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGAGCCCGCCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT22824770.4458141790978979No Hit
TAGAGCCCGCCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA17505310.3419143065846545No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACGTCCTGGTGTAGATCTC13263080.25905492684087283Illumina Single End PCR Primer 1 (96% over 32bp)
TAGAGCCCGCCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC9590870.18732919700328443No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)