FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007266338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007266338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48821811
Sequences flagged as poor quality0
Sequence length50
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG1094910.22426656807138923No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA633980.1298558957593769No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGATTGTATCAGGGTGTAGA598630.12261527947007127No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG579070.1186088733988176No Hit
GGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTT549130.11247636840018081No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG505240.10348653391821128No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)