FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007266349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007266349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45445344
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCGTTATGTATCTCG3358770.7390790132428088No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG758430.16688838354925864No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT625990.1377456841343307No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT552080.12148219188306729No Hit
CTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCGTTATGTATCGCG526970.11595687338179243No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC473930.10428571076500158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)