FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007266352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007266352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37767263
Sequences flagged as poor quality0
Sequence length50
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG1484160.39297526008172745No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG1100290.29133432306174795No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG1054450.2791968271568951No Hit
GGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTT1044440.2765463835703424No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGACGTGTCGTGGGGGTTGT958140.25369590589606666No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA843170.2232541976896764No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGACGTGTCGTGGGTGTAGA817690.2165076140148149No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGACGTGTCGTGGGGGTTGA770250.20394647078344014No Hit
AGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGT760190.2012827882179336No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG728340.19284955862435676No Hit
CAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAG663960.17580304932343124No Hit
GGAGGATCGCTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGAT637600.1688234596189827No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGACGTGTCGTGGGGGTAGA558420.1478582125477295No Hit
GATCGCTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGG535750.14185565949007212No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG515830.13658125027487428No Hit
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG513050.1358451630450425No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA426830.11301586773709282No Hit
CTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCT398520.10551995785344573No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)