FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007266357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007266357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49301560
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGCAATAATCTCG5626541.141249891484164No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1165380.23637791583065526No Hit
CTGTCTCTTATACACATCTCCGAGCCCACGAGACGAACGCAATAATCGCG1061340.21527513531012002No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT948630.19241378974620682No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT906510.18387044953547108No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG689000.13975217011388685No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA635920.1289857765149825No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)