FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007266358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007266358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49301560
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCTCTTATACACATCTGACGCTGCCGACGAACAGTAAGATGTGGGGG1934010.39228170467628204No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAACAGTAAGATGTGGGGT951720.19304054476166677No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAACAGTAAGATGTGGTGG925890.18780135963243355No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG796220.16149996065033237No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAACAGTAAGATGTGGTGT723320.14671341028559745No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG705770.1431536851977909No Hit
GGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTT687760.13950065677434953No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA584880.11863316292628467No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG509360.10331518921510799No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)