FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007266360

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007266360
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52678965
Sequences flagged as poor quality0
Sequence length50
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCTCTTATACACATCTGACGCTGCCGACGAACCACGACATGGGTTGT2897230.5499785350756227No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAACCACGACATGTGTAGA2277580.43235093931705004No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAACCACGACATGGGGTGT2036450.3865774507908422No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAACCACGACATGGGTTGA1971860.3743163898531416No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG1706620.3239661219615837No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA1410230.2677026779094844No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG1249610.237212329437376No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG1219740.23154213451232383No Hit
GGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTT1167300.22158749702086972No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAACCACGACATGGGGTGA1079900.20499643453511285No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG1062450.20168391691066825No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA900440.17092970600314566No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAACCACGACATGGGTTTT884400.1678848473959198No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAACCACGACATGGGTAGA833800.1582794954304816No Hit
GTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGAT788510.14968213593414376No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG760200.14430807438984422No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAACCACGACATGTGTTGA634080.12036682953053464No Hit
AGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGT610760.11594001514646311No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAACCACGACATGGGGTTT577390.10960541840561977No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAACCACGACATGTGTTGT553790.10512545187628497No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAACCACGACATGGGTTTA545110.10347773537312283No Hit
CAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAG543740.10321766951951317No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAACCACGACATGGGTTGG533730.10131748032635038No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)