FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007266368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007266368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48968036
Sequences flagged as poor quality0
Sequence length50
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCTCTTATACACATCTGACGCTGCCGACGAATGTTGTTGGGTGTAGA46529369.501986152762997No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAATGTTGTTGGGTGTAGT7574161.5467559287041859No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAATGTTGTTGGGTGTATA3397390.6937974804625613No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAATGTTGTTGGGTGTTGA1482080.3026627410582691No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG1395820.285047168320167No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG1190560.24313002873956388No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAATGTTGTTGGGTGTAGG1126010.2299479603388627No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAATGTTGTTGGGTGGAGA792480.16183618228021232No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAATGTTGTGGGGTGTAGA771340.15751908040583862No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAATGTTGTTGGGTGTATT741780.15148248951622237No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA729910.14905845927739475No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG686130.14011793325752334No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG570200.11644330599658928No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG556790.11370478489274105No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGAATGTTGTTGGGTGTTGT528360.10789895678070485No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)