FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007266378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007266378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44799237
Sequences flagged as poor quality0
Sequence length50
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCTCTTATACACATCTGACGCTGCCGACGACGATGCGGTTGTGGTGT1750760.39080129869176117No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT1640830.36626293434417195No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGACGATGCGGTTGTGTAGA1384530.3090521385442346No Hit
GAATAATCTCCCATATTGTAACTTACTACTCCGGAAAAAAAGAACCATTT1227970.27410511478130756No Hit
GAGCTGGAGTCCTAGGCACAGCTCTAAGCCTCCTTATTCGAGCCGAGCTG1037410.23156867604687106No Hit
GGAGGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGTCACCC926440.20679816488838862No Hit
GTGGCGTTCAGCCACCCGAGATTGAGCAATAACAGGTCTGTGATGCCCTT886340.1978471195837554No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA873780.19504350040604485No Hit
GGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTT824560.18405670614434794No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG817970.1825856989483995No Hit
AAAAGAACCATTTGGATACATAGGTATGGTCTGAGCTATGATATCAATTG795230.17750971964098405No Hit
GGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGAACTATGCCTGG778470.1737685844962047No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGACGATGCGGTTGTGTTGT771630.1722417727784069No Hit
TATACCTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAAGC751210.1676836594337533No Hit
CCTGAAGTTTATATTCTTATCCTACCAGGCTTCGGAATAATCTCCCATAT703830.1571075864528675No Hit
GGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGA691020.1542481627533076No Hit
CGTAGACACACGAGCATATTTCACCTCCGCTACCATAATCATCGCTATCC676440.15099364303905444No Hit
CTGTCTCTTATACACATCTGACGCTGCCGACGACGATGCGGTTGTGGTGG676220.15094453505982702No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA649860.14506050627603323No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG648370.1447279113258112No Hit
CAAACTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGT646700.14435513711985765No Hit
CTGAAGTTTATATTCTTATCCTACCAGGCTTCGGAATAATCTCCCATATT628380.14026578175873844No Hit
AGCTGGAGTCCTAGGCACAGCTCTAAGCCTCCTTATTCGAGCCGAGCTGG622290.13890638360648866No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA621800.13879700674366396No Hit
ACTATACCTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAA580130.12949550904181695No Hit
GTCACCCTGAAGTTTATATTCTTATCCTACCAGGCTTCGGAATAATCTCC572790.12785708828032047No Hit
ATTTCACCTCCGCTACCATAATCATCGCTATCCCCACCGGCGTCAAAGTA568820.12697091247335304No Hit
GAGGAGGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGTCAC565880.1263146512964049No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA551450.12309361429526132No Hit
CATCGCTATCCCCACCGGCGTCAAAGTATTTAGCTGACTCGCCACACTCC528460.11796183046599655No Hit
GGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGG525940.11739932088575528No Hit
AGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGT522500.11663145066510842No Hit
CGTGTGAGCACACCATATATTTACAGTAGGAATAGACGTAGACACACGAG508380.11347961127105802No Hit
TATCAATTGGCTTCCTAGGGTTTATCGTGTGAGCACACCATATATTTACA505470.11283004663673178No Hit
GTCGTCCGGCCCCGCCGCGCCGGCTCCCCGTCTTCGGGGCCGGCCGGATT502800.11223405434338089No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG498300.11122957295009288No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT498290.1112273407692189No Hit
GAACACTATACCTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAGCT491340.10967597506180742No Hit
GGGCGCGACCCGCTCCGGGGACAGTGCCAGGTGGGGAGTTTGACTGGGGC477950.10668708487155708No Hit
GTCGGGGGAGCGCGTCCCGGTCGCCGCGGTTCGCCGCCCGCCCCCGGTGG475870.1062227912497706No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA460130.10270933855413653No Hit
TGGAACACTATACCTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAG450840.10063564252221528No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)