FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007266445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007266445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80565123
Sequences flagged as poor quality0
Sequence length50
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT4792910.5949112744481256No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT4336590.5382713807809864No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT3579370.4442828195024291No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG3386180.42030346059299134No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA2616820.32480804379830713No Hit
GCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT2612030.3242134937223394No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA2526660.31361709706568686No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG2332730.28954588699628747No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT2304190.2860034111783085No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG2216090.2750681582153111No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA1954310.24257518976294493No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA1769390.21962232962767278No Hit
CCGGGAGGGACCACCGGGCCGCGCTCGGGCGCACGCGCGCGCCGAACGGG1706880.21186338907469923No Hit
GGGCGGGCGCGCGCGCGTACGCGCGGGGAGGGCGAGGAGGACGGGCGGGG1648930.20467045026419184No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC1626330.20186526618968856No Hit
GTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTA1599170.1984940803727191No Hit
GCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTCAT1560510.1936954778806705No Hit
GGCGGGCGCGCGCGCGTACGCGCGGGGAGGGCGAGGAGGACGGGCGGGGC1547140.1920359508419046No Hit
GGCGAGGAGGACGGGCGGGGCCTCGGAGGAGGGGCGGCGGGGAGGAGGAG1494100.18545245689006148No Hit
GTGGGAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATT1479650.18365887680702728No Hit
GCGAGGAGGACGGGCGGGGCCTCGGAGGAGGGGCGGCGGGGAGGAGGAGG1470340.18250328991615888No Hit
CTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATT1460080.18122978599561002No Hit
GCGAGGAGGACGGGGGGGGGCCTCGGAGGAGGGGCGGCGGGGAGGAGGAG1436190.17826448300711958No Hit
GGCGAGGAGGACGGGGGGGGGCCTCGGAGGAGGGGCGGCGGGGAGGAGGA1419570.1762015556036574No Hit
CACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCAT1407840.17474559059507672No Hit
GTCCGGGAGGGACCACCGGGCCGCGCTCGGGCGCACGCGCGCGCCGAACG1345690.16703133439019263No Hit
GCCGGGAGAAGACGAGAGACCACGGGCGAGGCCGGGGCGACGGGGAAGGC1292390.1604155684091738No Hit
CCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC1252510.1554655356263777No Hit
GTCCATCCTCCGACCCGGTCCCGCTCCGGGAGACCGGCGCGCCCCCACCG1218990.1513049263264949No Hit
CCCCCACCGAGAACCGCCTCGCGAGCCCCGGGGCCCCGCCACCGGGGGCC1209430.1501183086383422No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG1111460.1379579597985595No Hit
CGGGAGAAGACGAGAGACCACGGGCGAGGCCGGGGCGACGGGGAAGGCGC1105670.13723928653345444No Hit
CTCCGACCCGGTCCCGCTCCGGGAGACCGGCGCGCCCCCACCGTGGGACG1100840.1366397715299212No Hit
GGGAAGAAGAGGATCGGCGGGCGGCGGGCGGGGAAGAGGGCACAGACGGG1095140.13593226935183852No Hit
CGTCGCTCGTGATTCTCGTCCATCCTCCGACCCGGTCCCGCTCCGGGAGA1082010.13430253187846555No Hit
GTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGT1062610.13189454200920167No Hit
CGCACGAACGCCTGTCCGGGAGGGACCACCGGGCCGCGCTCGGGCGCACG1034750.1284364699598361No Hit
CCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAAT1031040.12797597292813664No Hit
CCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAG990010.12288319847783265No Hit
GTGGAAGTGAGCTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTG973900.12088357390083052No Hit
GCCGGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCG962580.11947849939979611No Hit
GGGGGAAGAAGAGGATCGGCGGGCGGCGGGCGGGGAAGAGGGCACAGACG946850.11752604163466616No Hit
CATCCTCCGACCCGGTCCCGCTCCGGGAGACCGGCGCGCCCCCACCGTGG924910.11480277886499349No Hit
GGGCGGGCGCGCGCGCGTACGCGCGGGGAGGGCGAGGAGGACGGGGGGGG916580.11376883269947964No Hit
GGGAGGGACCACCGGGCCGCGCTCGGGCGCACGCGCGCGCCGAACGGGGC911530.1131420105943362No Hit
GCCGGGCGGGCGGGCGCGCGCGCGTACGCGCGGGGAGGGCGAGGAGGACG898900.11157433471553192No Hit
GGCGGGCGCGCGCGCGTACGCGCGGGGAGGGCGAGGAGGACGGGGGGGGG898170.11148372478746169No Hit
TCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGAT877830.10895905912040871No Hit
GCCACCACCACCGTCGCTCGTGATTCTCGTCCATCCTCCGACCCGGTCCC876410.10878280419183374No Hit
GCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTT868170.10776002911334226No Hit
CTGCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGT861390.10691847389099125No Hit
CGCTAGAGAAGGCTTTTCTCACCGAGGGTGGGTCACACTCCCCCCACCCG857070.10638226171391807No Hit
CTCGTCCATCCTCCGACCCGGTCCCGCTCCGGGAGACCGGCGCGCCCCCA857050.10637977925013532No Hit
GGGGGGGCCTCGGAGGAGGGGCGGCGGGGAGGAGGAGGGGCGCGGGAGCG843950.1047537654724365No Hit
GGGAGGTAAGAGTCAGAAGCTTATGTTGTTTATGCGGGGAAACGCCATAT829200.10292294843266112No Hit
GGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGGAG822500.10209132306544112No Hit
GCGAGCGACCGGCAAGGCGGAGGTCGACCCACGCCACACGTCGCACGAAC820030.10178473878827193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)