FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007271759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007271759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39602411
Sequences flagged as poor quality0
Sequence length76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTGTACTGAGCTGCCCCGAGTGGAATTCTCGGGTGCCAAGGAACTCCA20711125.229762400072056RNA PCR Primer, Index 1 (100% over 28bp)
TCCTGTACTGAGCTGCCCCGAGTTGGAATTCTCGGGTGCCAAGGAACTCC16558664.181225228938713RNA PCR Primer, Index 1 (100% over 27bp)
GCCGCCGGTGAAATACCACTACTTGGAATTCTCGGGTGCCAAGGAACTCC15942704.025689244021026RNA PCR Primer, Index 1 (100% over 27bp)
AAGCTGCCAGTTGAAGAACTGTTGGAATTCTCGGGTGCCAAGGAACTCCA15349673.875943310623184RNA PCR Primer, Index 1 (100% over 28bp)
TCCTGTACTGAGCTGCCCCGATGGAATTCTCGGGTGCCAAGGAACTCCAG11254552.8418850559376296RNA PCR Primer, Index 1 (100% over 29bp)
TAGCAGCACGTAAATATTGGCGTGGAATTCTCGGGTGCCAAGGAACTCCA9016422.2767351210005877RNA PCR Primer, Index 1 (100% over 28bp)
GCTCCCATCGTCTAGAGGCCTAGGACTCCGCCCTGGAATTCTCGGGTGCC7358191.8580156647533403No Hit
GCCGCCGGTGAAATACCACTACTGGAATTCTCGGGTGCCAAGGAACTCCA6421331.6214492597433021RNA PCR Primer, Index 1 (100% over 28bp)
TCCTGTACTGAGCTGCCCCGAGATGGAATTCTCGGGTGCCAAGGAACTCC5583801.4099646609899585RNA PCR Primer, Index 1 (100% over 27bp)
AAACCGTTACCATTACTGAGTTTTGGAATTCTCGGGTGCCAAGGAACTCC4572131.154507991950288RNA PCR Primer, Index 1 (100% over 27bp)
CTGACCTATGAATTGACAGCCTGGAATTCTCGGGTGCCAAGGAACTCCAG4317921.09031745567208RNA PCR Primer, Index 1 (100% over 29bp)
GCTCCCATCGTCTAGAGGCCTAGGACTCCGCCCTTGGAATTCTCGGGTGC4053211.023475565666949No Hit
TACCCTGTAGAACCGAATTTGTTGGAATTCTCGGGTGCCAAGGAACTCCA3472550.8768531794693005RNA PCR Primer, Index 1 (100% over 28bp)
AAACCGTTACCATTACTGAGTTGGAATTCTCGGGTGCCAAGGAACTCCAG3386990.8552484342430565RNA PCR Primer, Index 1 (100% over 29bp)
CGGGCTGTAGCGCAGTTTGGTAGCGCACCTCACTTGGAATTCTCGGGTGC3143860.7938557074214496No Hit
TGTAAACATCCTTGACTGGAAGCTTGGAATTCTCGGGTGCCAAGGAACTC3110650.7854698543480093RNA PCR Primer, Index 1 (100% over 26bp)
AAACCGTTACCATTACTGAGTTTGGAATTCTCGGGTGCCAAGGAACTCCA3096830.7819801678236207RNA PCR Primer, Index 1 (100% over 28bp)
TAGCTTATCAGACTGATGTTGATGGAATTCTCGGGTGCCAAGGAACTCCA3045640.7690541871301725RNA PCR Primer, Index 1 (100% over 28bp)
GGCCCTGGCGGAGCGCTGAGAAGACGGTCTGGAATTCTCGGGTGCCAAGG3031380.7654533962591318Illumina Small RNA Adapter 2 (100% over 21bp)
CCACTACTCTCATCGTTTTTTCACTGGAATTCTCGGGTGCCAAGGAACTC3031200.7654079444809561RNA PCR Primer, Index 1 (100% over 26bp)
CAACGGAATCCCAAAAGCAGCTGTGGAATTCTCGGGTGCCAAGGAACTCC2519620.6362289407076757RNA PCR Primer, Index 1 (100% over 27bp)
TATTGCACTTGTCCCGGCCTGTTGGAATTCTCGGGTGCCAAGGAACTCCA2481280.626547711956224RNA PCR Primer, Index 1 (100% over 28bp)
CCCGCGGGGCCCCGTCGTCCCCCGCGTCGTCGCCTGGAATTCTCGGGTGC2427280.6129121785034755No Hit
GCCCCGTTCGTCTAGCGGCCTAGGACGCCGCCCTTGGAATTCTCGGGTGC2354380.5945042083422648No Hit
GGCCGCCGGTGAAATACCACTACTTGGAATTCTCGGGTGCCAAGGAACTC2304390.5818812395033222RNA PCR Primer, Index 1 (100% over 26bp)
GCGGCGACTCTGGACGCGAGCCGGGCCCTGGAATTCTCGGGTGCCAAGGA2253540.5690411121686506RNA PCR Primer, Index 1 (100% over 22bp)
TGTAAACATCCTCGACTGGAAGCTTGGAATTCTCGGGTGCCAAGGAACTC2051420.5180038154747699RNA PCR Primer, Index 1 (100% over 26bp)
TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTCGAAGATCTCGTATGC1942340.4904600379002177RNA PCR Primer, Index 47 (100% over 50bp)
GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTGGAATTCTCGGGTGCCA1915400.48365742176656873No Hit
CATTGCACTTGTCTCGGTCTGATGGAATTCTCGGGTGCCAAGGAACTCCA1872120.47272879421406944RNA PCR Primer, Index 1 (100% over 28bp)
TCCTGTACTGAGCTGCCCCGAGTTTGGAATTCTCGGGTGCCAAGGAACTC1848790.46683773874272455RNA PCR Primer, Index 1 (100% over 26bp)
ACGGCCCTGGCGGAGCGCTGAGAAGACGGTCTGGAATTCTCGGGTGCCAA1818380.45915891332979697No Hit
TACCCTGTAGATCCGAATTTGTTGGAATTCTCGGGTGCCAAGGAACTCCA1776630.44861662589179235RNA PCR Primer, Index 1 (100% over 28bp)
CCGCGGGGCCCCGTCGTCCCCCGCGTCGTCGCCTGGAATTCTCGGGTGCC1754390.4430008061882899No Hit
GCTCCCATCGTCTAGAGGCCTAGGACTCCGCCTGGAATTCTCGGGTGCCA1736610.43851118054403304No Hit
CCCCGCGGGGCCCCGTCGTCCCCCGCGTCGTCGCCTGGAATTCTCGGGTG1543420.3897287970674311No Hit
CCCATAAAGTAGAAAGCACTTGGAATTCTCGGGTGCCAAGGAACTCCAGT1532560.38698653978415604RNA PCR Primer, Index 1 (100% over 30bp)
TCAGTGCACTACAGAACTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCA1432890.3618188801686847RNA PCR Primer, Index 1 (100% over 28bp)
GCCGCCGGTGAAATACCACTACTCTCATCGTTTTTTCACTGTGGAATTCT1409780.3559833768706658No Hit
TGACCTATGAATTGACAGCCAGTTGGAATTCTCGGGTGCCAAGGAACTCC1339470.33822940729542955RNA PCR Primer, Index 1 (100% over 27bp)
CGGCGACTCTGGACGCGAGCCGGGCCCTGGAATTCTCGGGTGCCAAGGAA1326660.33499475574858306RNA PCR Primer, Index 1 (100% over 23bp)
CCACTACTCTCATCGTTTTTTCACTTGGAATTCTCGGGTGCCAAGGAACT1298500.3278840775628534RNA PCR Primer, Index 1 (100% over 25bp)
CCACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACTCG1094690.2764200391738776RNA PCR Primer, Index 10 (97% over 36bp)
CCCGGCTCCGGCCGGGGGTCGGGCGCTGGAATTCTCGGGTGCCAAGGAAC1039520.26248906916298603RNA PCR Primer, Index 1 (100% over 24bp)
GCGGCGACTCTGGACGCGAGCCGGGCCTGGAATTCTCGGGTGCCAAGGAA1034810.2612997476340519RNA PCR Primer, Index 1 (100% over 23bp)
CTGACCTATGAATTGACAGCCATGGAATTCTCGGGTGCCAAGGAACTCCA928240.2343897698551737RNA PCR Primer, Index 1 (100% over 28bp)
TGTAAACATCCTCGACTGGATGGAATTCTCGGGTGCCAAGGAACTCCAGT926060.2338392983194887RNA PCR Primer, Index 1 (100% over 30bp)
CCCGCGGGGCCCCGTCGTCCCCCGCGTCGTCGCCACCTGGAATTCTCGGG868650.21934270618018686No Hit
AAGCTGCCAGTTGAAGAACTGTGGAATTCTCGGGTGCCAAGGAACTCCAG861170.2174539322871024RNA PCR Primer, Index 1 (100% over 29bp)
GCGCCCGTAGCTCAACGGATAGAGCATCTGACTGGAATTCTCGGGTGCCA855640.21605755265758944No Hit
CCGCGGGGCCCCGTCGTCCCCCGCGTCGTCGCCACCTGGAATTCTCGGGT844260.21318399023736206No Hit
TATTGCACTTGTCCCGGCCTGTGGAATTCTCGGGTGCCAAGGAACTCCAG842320.21269412107257812RNA PCR Primer, Index 1 (100% over 29bp)
TGTAAACATCCCCGACTGGAAGCTTGGAATTCTCGGGTGCCAAGGAACTC813240.20535113379839426RNA PCR Primer, Index 1 (100% over 26bp)
CCCGGCTCCGGCCGGGGGTCGGGCGCCGTGGAATTCTCGGGTGCCAAGGA800050.20202052849762103RNA PCR Primer, Index 1 (100% over 22bp)
CCCGGCTCCGGCCGGGGGTCGGGTGGAATTCTCGGGTGCCAAGGAACTCC796830.20120744668803117RNA PCR Primer, Index 1 (100% over 27bp)
GGGGCGGCGGGTAACCCCGCGGGGGTGGAATTCTCGGGTGCCAAGGAACT796290.20107109135350368RNA PCR Primer, Index 1 (100% over 25bp)
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGTGGAATTCTCGGGTGCCAAG794060.20050799432388094No Hit
GGGGCGGCGGGTAACCCCGCGGGGTGGAATTCTCGGGTGCCAAGGAACTC788580.1991242401883057RNA PCR Primer, Index 1 (100% over 26bp)
GGCGGCGACTCTGGACGCGAGCCGGGCCCTGGAATTCTCGGGTGCCAAGG758670.1915716697147555Illumina Small RNA Adapter 2 (100% over 21bp)
GACTCTTAGCGGTGGATCACTCGGCTGGAATTCTCGGGTGCCAAGGAACT754910.1906222325706382RNA PCR Primer, Index 1 (100% over 25bp)
GCCCCGTTCGTCTAGCGGCCTAGGACGCCGCCCTGGAATTCTCGGGTGCC736720.18602907787609194No Hit
GGCCGCCGGTGAAATACCACTACTGGAATTCTCGGGTGCCAAGGAACTCC729270.18414787927937015RNA PCR Primer, Index 1 (100% over 27bp)
TCCTGTACTGAGCTGCCCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGT722930.18254696664806594RNA PCR Primer, Index 1 (100% over 30bp)
CTCCGGCGGCGGGCGCGGGGGGTGGAATTCTCGGGTGCCAAGGAACTCCA700510.17688569516638775RNA PCR Primer, Index 1 (100% over 28bp)
GCGCCCGTAGCTCAACGGATAGAGCATCTGACTTGGAATTCTCGGGTGCC662990.16741152451551497No Hit
ATGACCTATGATTTGACAGACCTGGAATTCTCGGGTGCCAAGGAACTCCA627170.15836662065852505RNA PCR Primer, Index 1 (100% over 28bp)
GGGCCCCGTCGTCCCCCGCGTCGTCGCCTGGAATTCTCGGGTGCCAAGGA612320.15461684895901917RNA PCR Primer, Index 1 (100% over 22bp)
CGCGGGGCCCCGTCGTCCCCCGCGTCGTCGCCTGGAATTCTCGGGTGCCA607600.15342500233129747No Hit
CATTATTACTTTTGGTACGCGTGGAATTCTCGGGTGCCAAGGAACTCCAG596150.15053376421955725RNA PCR Primer, Index 1 (100% over 29bp)
CCCGGCTCCGGCCGGGGGTCGGGCTGGAATTCTCGGGTGCCAAGGAACTC580850.1466703630746118RNA PCR Primer, Index 1 (100% over 26bp)
CAAAGTGCTGTTCGTGCAGGTAGTGGAATTCTCGGGTGCCAAGGAACTCC570310.14400890895253826RNA PCR Primer, Index 1 (100% over 27bp)
TATTGCACTTGTCCCGGCCTGATGGAATTCTCGGGTGCCAAGGAACTCCA568140.14346096251564078RNA PCR Primer, Index 1 (100% over 28bp)
CTGACCTATGAATTGACAGCCTTGGAATTCTCGGGTGCCAAGGAACTCCA549880.13885013212958172RNA PCR Primer, Index 1 (100% over 28bp)
CCCTTCCCGTGGATCGCCTCAGCTGGAATTCTCGGGTGCCAAGGAACTCC539460.13621897919295875RNA PCR Primer, Index 1 (100% over 27bp)
TCCTGTACTGAGCTGCCCCGATTGGAATTCTCGGGTGCCAAGGAACTCCA538160.13589071635057773RNA PCR Primer, Index 1 (100% over 28bp)
TGACCTATGAATTGACAGCCATGGAATTCTCGGGTGCCAAGGAACTCCAG532990.13458524027741645RNA PCR Primer, Index 1 (100% over 29bp)
CAAAGTGCTGTTCGTGCAGGTTGGAATTCTCGGGTGCCAAGGAACTCCAG531340.13416859897747133RNA PCR Primer, Index 1 (100% over 29bp)
CATTGCACTTGTCTCGGTCTTGGAATTCTCGGGTGCCAAGGAACTCCAGT519630.13121170829725495RNA PCR Primer, Index 1 (100% over 30bp)
CGGCGACTCTGGACGCGAGCCGGGCCTGGAATTCTCGGGTGCCAAGGAAC498840.12596202791794672RNA PCR Primer, Index 1 (100% over 24bp)
GGGCCCCGTCGTCCCCCGCGTCGTCGCCACCTGGAATTCTCGGGTGCCAA495530.12512622021926897No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTGGAATTCTCGGGTG493910.12471715421568652No Hit
TGTAACAGCAACTCCATGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAG489950.12371721509581828RNA PCR Primer, Index 1 (100% over 29bp)
TGACCTATGAATTGACAGCCAGTGGAATTCTCGGGTGCCAAGGAACTCCA479160.1209926335040561RNA PCR Primer, Index 1 (100% over 28bp)
CGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTGGAATTCTCGGGTGCC478800.12090172994770444No Hit
GCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTGGAATTCTCGGGTGC465210.11747012069542938No Hit
TCCGTCGTAGTCTAGGTGGTTAGGATACTCGGTGGAATTCTCGGGTGCCA459430.11601061359622776No Hit
CCCGGCTCCGGCCGGGGGTCGGGCGTGGAATTCTCGGGTGCCAAGGAACT459360.11599293790471495RNA PCR Primer, Index 1 (100% over 25bp)
TTCACAGTGGCTAAGTTCTGTGGAATTCTCGGGTGCCAAGGAACTCCAGT458980.1158969841507882RNA PCR Primer, Index 1 (100% over 30bp)
TGAGATGAAGCACTGTAGCTCTGGAATTCTCGGGTGCCAAGGAACTCCAG458380.11574547822353543RNA PCR Primer, Index 1 (100% over 29bp)
CCCGGCTCCGGCCGGGGGTCGGGCGCCGGTGGAATTCTCGGGTGCCAAGG456640.11530611103450243Illumina Small RNA Adapter 2 (100% over 21bp)
TCCCCGCGGGGCCCCGTCGTCCCCCGCGTCGTCGCCTGGAATTCTCGGGT441740.11154371384105882No Hit
GCCGCCGGTGAAATACCACTACTCTGGAATTCTCGGGTGCCAAGGAACTC439160.11089223835387195RNA PCR Primer, Index 1 (100% over 26bp)
TTCCCCGCGGGGCCCCGTCGTCCCCCGCGTCGTCGCCTGGAATTCTCGGG437460.11046297155998912No Hit
GGCGGCGACTCTGGACGCGAGCCGGGCCTGGAATTCTCGGGTGCCAAGGA433970.10958171208313554RNA PCR Primer, Index 1 (100% over 22bp)
CAAAGAATTCTCCTTTTGGGCTTGGAATTCTCGGGTGCCAAGGAACTCCA433530.10947060773648352RNA PCR Primer, Index 1 (100% over 28bp)
CGGGCCGCCGGTGAAATACCACTACTGGAATTCTCGGGTGCCAAGGAACT430040.10858934825962994RNA PCR Primer, Index 1 (100% over 25bp)
GCTGGACGAGGCGCCGCCGCCTGGAATTCTCGGGTGCCAAGGAACTCCAG422640.10672077515684589RNA PCR Primer, Index 1 (100% over 29bp)
CCCCGCGGGGCCCCGTCGTCCCCCGCGTCGTCGCCACCTGGAATTCTCGG419200.10585214117393005No Hit
GCGGCGACTCTGGACGCGAGCCGGGCCCTTGGAATTCTCGGGTGCCAAGG418140.10558448070245018Illumina Small RNA Adapter 2 (100% over 21bp)
GGGGCGGCGGGTAACCCCGCGGGGGTTGGAATTCTCGGGTGCCAAGGAAC404650.10217812243805055RNA PCR Primer, Index 1 (100% over 24bp)
TGAGATGAAGCACTGTAGCTCTTGGAATTCTCGGGTGCCAAGGAACTCCA402120.1015392724448014RNA PCR Primer, Index 1 (100% over 28bp)
TCCTGTACTGAGCTGCCCCGAGATTGGAATTCTCGGGTGCCAAGGAACTC401380.101352415134523RNA PCR Primer, Index 1 (100% over 26bp)
AGCCGGGCCCTTCCCGTGGATCGCCTCAGCTGGAATTCTCGGGTGCCAAG396780.10019086969225181No Hit

[FAIL]Adapter Content

Adapter graph