FastQCFastQC Report
Tue 14 May 2024
EGAF00007271964

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007271964
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences265503484
Total Bases40 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCACCCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT13711800.5164452003951858No Hit
TTCGCACCCGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA6917540.2605442269827239No Hit
TTCGCACCCGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC3530600.1329775393832497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)