FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007277412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007277412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5528391
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAAT2358914.266901527044668No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGCCAACTGTAGGCACCATCAA859831.555298820217311No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAAT769951.3927198709353228No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGCCTAACTGTAGGCACCATCA613041.1088940706256123No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATA603431.0915110743795076No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATC600541.0862835135937383No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATT530670.9598995440083743No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA440870.79746530229139No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATTAACTGTAGGCACCATCAA351530.6358631290731788No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATG334280.6046605603691924No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCAACTGTAGGCACCATCAA283330.5124999299072732No Hit
GCGTTGGTGGTATAGTGGTGAGCATAGCTGCCAACTGTAGGCACCATCAA219330.3967338779040774No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA216580.3917595553570651No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTAACTGTAGGCACCATCA207390.37513627382723114No Hit
GCCCGGATGATCCTCAGTGGTCTGGGGTGCAGGAACTGTAGGCACCATCA198630.35929079545929365No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGAACTGTAGGCACCATCAAT197410.35708400509298277No Hit
AGTAAGGTCAGCTAAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGT196730.3558539907904488No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGCAACTGTAGGCACCATCAAT194080.3510605526996915No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATA119370.21592177543158578No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAA115000.2080171246932426No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATC114570.2072393215313461No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATT102490.18538847921574286No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATTA95090.17200302945287335No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATCC91410.1653464814626896No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGAAACTGTAGGCACCATCAATA87730.15868993347250585No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAC85200.15411355672925448No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGAACTGTAGGCACCATCAATA83860.15168970501543758No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATCA82470.14917541107349316No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGAACTGTAGGCACCATCAATC81720.14781877765158072No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATTT81040.14658876334904677No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAT79450.14371270049459237No Hit
GCATTTGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAAT79380.14358608137521386No Hit
GCGTTGGTGGTATAGTGGTGAGCATAGCTGCAACTGTAGGCACCATCAAT76550.13846705126319755No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGAAACTGTAGGCACCATCAATT73610.13314904824930074No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGAAACTGTAGGCACCATCAATC70110.12681809228037597No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGAACTGTAGGCACCATCAATT69870.126383969585364No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATTC68910.12464747880531606No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATGA68830.12450277124031206No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATG67640.12235024621087764No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAG67380.12187994662461465No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATCG65700.11884108775953076No Hit
GCGTTGGTGGTATAGTGGTTAGCATAGCTGCCAACTGTAGGCACCATCAA63820.11544045998193687No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA59320.10730065945046217No Hit
GCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAACTGTAG58450.10572696468104373No Hit
GGTTCGTGCTGAAGGCCTGTATCCTAGGCTACACACTGAGGACTAACTGT58060.10502151530164924No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCAACTGTAGGCACCATCAAT57280.1036106165428603No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATTG56050.10138573773092387No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)