FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007277415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007277415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5936930
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCCGCTGGTGTAGTGGTATCATGCAAGATTAACTGTAGGCACCATCAA2356073.968498870628422No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAAT1469752.4756060792362384No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA1348492.271359103105477No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATA1336742.2515677294493956No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATT1184451.9950546831443188No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATC1181161.989513098520616No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAAT1080231.8195094097454407No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCAACTGTAGGCACCATCAA1005371.693417304903376No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATG741021.2481535069471932No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAAT601101.0124761450783486No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTAACTGTAGGCACCATCA503800.8485867274837331No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA436460.7351611017815605No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCAACTGTAGGCACCATCAAT398100.670548583190302No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGTAACTGTAGGCACCATCAA375780.6329533951048775No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCCAACTGTAGGCACCATCAA321450.5414414520636086No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAA309730.5217006095743086No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGAACTGTAGGCACCATCAAT293680.4946664353462143No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATA283310.47719949536208106No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCAACTGTAGGCACCATCAA259530.4371451238266242No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATTA254320.4283695445289063No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATT250500.42193524262539733No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATC246470.4151472225544179No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATCC244060.41108788548963854No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAC239070.40268286808165166No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATTT225580.37996068675224404No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGTTTAACTGTAGGCACCATC217360.3661151470541172No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAT212040.35715428681153394No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATCA209780.353347605580662No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATTC191550.32264149989977986No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATGA187100.3151460434938596No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAG186200.31363010849041506No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATCG174440.2938218911120731No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGAAACTGTAGGCACCATCAATA162960.2744852979570249No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATG160820.270880741393279No Hit
GTTTCCGTAGTGTAGCGGTTATCACATTCGCCAACTGTAGGCACCATCAA159770.2691121505559271No Hit
GCCCGGATGATCCTCAGTGGTCTGGGGTGCAGGAACTGTAGGCACCATCA156520.2636379408212662No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATTG150450.2534138014091458No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAATA148160.2495565890114925No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATGT146420.24662578133816637No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGAAACTGTAGGCACCATCAATT140860.2372606717613312No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAATT132030.2223876650053142No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGAAACTGTAGGCACCATCAATC127000.21391527270828528No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGTTAACTGTAGGCACCATCA125500.21138871436921103No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATGC123930.20874424997431332No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATCT121080.20394378913007227No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAATC118980.20040660745536837No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGCAACTGTAGGCACCATCAAT118860.20020448278824243No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATAACTGTAGGCACCATCAAT114210.19237215193711227No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATAACTGTAGGCACCAT102050.1718901856683505No Hit
GCATTTGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAAT100260.16887515938372188No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCAACTGTAGGCACCATCAAT94270.15878576974968545No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCCTAACTGTAGGCACCATCA92590.1559560244099223No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGAAACTGTAGGCACCATCAATG89120.15011125278553056No Hit
GCATTTGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA86900.1463719464437007No Hit
GCATTTGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATA81820.1378153355353693No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAATG81240.1368383996442606No Hit
GCGTTGGTGGTATAGTGGTTAGCATAGCTGCAACTGTAGGCACCATCAAT74800.12599104250850188No Hit
GCATTTGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATT74700.12582260528589692No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCAACTGTAGGCACCATCAATA73380.1235992339475116No Hit
GCATTTGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATC72740.12252123572283992No Hit
AGTAAGGTCAGCTAAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGT70070.11802396187928779No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCAACTGTAGGCACCATCAATT63940.10769876013360441No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCAACTGTAGGCACCATCAATC62970.10606491907433639No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATGG62770.10572804462912651No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGAACTGTAGGCACCATCAATA60640.10214033178764109No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)