FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007277465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007277465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3144216
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATACATGATGATCTCAATCCAACTTGAACTCTCTCACTGATTACTTGATG55980.17804120327611078No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA50900.1618845524607724No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC48930.15561907960521795No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTAACTGTAGGCACCATCA47900.1523432232391159No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCAACTGTAGGCACCATC44930.14289730730967592No Hit
TTGAATGATGACTTTAATTGTCGGATACCCCTTCACTCCTTTTATGAGTG36720.11678586967307589No Hit
ACAGATGATGAACTTATTGACGGGCGGACAGAAACTGTGTGCTGATTGTC33580.1067992784210754No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)