FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007277469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007277469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4242527
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTAACTGTAGGCACCATCA3100457.308026560585236No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGCTAACTGTAGGCACCATCAA1690533.984724198573162No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCAACTGTAGGCACCATCAA1289593.039674231890569No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA1233322.907041015885108No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCAACTGTAGGCACCATC944872.2271396269251795No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCAACTGTAGGCACCATCAA725611.7103250020565575No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCTAACTGTAGGCACCAT706801.6659882188139286No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGCAACTGTAGGCACCATCAAT408860.963718085942647No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGCTCTAACTGTAGGCACCATC368730.8691282341868419No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATA349830.8245793132253489No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATT311640.7345622078539512No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAAT293230.6911682589173858No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATC287160.6768607483228746No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATG189790.4473513073694051No Hit
TCCCCTGTGGTCTAGTGGTTAGGATTCGGCGCTAACTGTAGGCACCATCA180540.4255482640416902No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTAACTGTAGGCACCATCA177730.41892485304159527No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCCTAACTGTAGGCACCATCA144440.34045746791947346No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCAACTGTAGGCACCAT136190.321011510356917No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCTCAACTGTAGGCACCA125990.2969692355523017No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC124500.29345717776221575No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAAT121760.28699876276568187No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGAACTGTAGGCACCATCA114760.27049916240957333No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGCCAACTGTAGGCACCATCAA86960.20497217813817092No Hit
AGTAAGGTCAGCTAAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGT84350.19882018429110762No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA81270.1915603601344199No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCAACTGTAGGCACCATCAAT72380.17060586768216207No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAA68730.16200250463933405No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGCTCTCAACTGTAGGCACCAT67570.15926828515175037No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAAT62730.14785999004838388No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATTA55920.13180823598765548No Hit
GCATTTGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA54470.12839046162817586No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCAACTGTAGGCACCATCAATA54170.12768333589862835No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAATA53150.1252791084181668No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCAACTGTAGGCACCATCAATT49550.11679359966359673No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATTT49510.11669931623299039No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAC49340.11629861165291346No Hit
CGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAACCAAACTGTAGGCACC48380.11403580931836144No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATCA47660.11233870756744743No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCAACTGTAGGCACCATCAATC47630.11226799499449266No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAT47420.11177300698380942No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTGCAACTGTAGGCACCATC47310.11151372754964199No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATCC46760.11021733037880489No Hit
GTTTCCGTAGTGTAGCGGTTATCACATTCGCCAACTGTAGGCACCATCAA46390.1093452086456963No Hit
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT45750.10783667375599496No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAATT45550.1073652566029633No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA45220.10658741830046102No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCCAACTGTAGGCACCATCAA44110.10397105310113525No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)