FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007277474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007277474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6016684
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCCGCTGGTGTAGTGGTATCATGCAAGATTAACTGTAGGCACCATCAA682571.134462105704737No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAA516240.8580141486573002No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA503950.8375876147060408No Hit
GTTTCCGTAGTGTAGCGGTTATCACATTCGCCAACTGTAGGCACCATCAA455160.7564964355781357No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAAT440740.7325297456206774No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATTA430160.714945308744817No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATCC420810.6994051873091557No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAC406850.6762030380854305No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATCA386630.6425964867026422No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATTT379240.6303139736107131No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAT359080.5968071449323249No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATTC326150.5420760006674773No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAG311530.5177769016953525No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATGA308290.5123918756577543No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATCG307840.5116439553747546No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATA280760.46663577478890367No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATC266580.44306797564904526No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATTG249750.41509575706485496No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATT246280.40932846066039036No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATGT240060.3989905403042606No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGAACTGTAGGCACCATCAAT235380.39121216936106334No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCAACTGTAGGCACCATCAA231320.38446426636333236No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATCT228360.3795446129462674No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTAACTGTAGGCACCATCA221580.3682759473490714No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATGC199330.3312954444674176No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAAT197000.3274228794465523No Hit
GCGCCGCTGGTGTAGTGGTATCATACAAGATTAACTGTAGGCACCATCAA194170.3227192918890206No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATAACTGTAGGCACCAT157970.2625532602343749No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA152400.2532956691759115No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATG148740.24721258420751366No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAAT140340.23325140559151852No Hit
GTTTCCGTAGTGTAGCGGTTATCACATTCGAACTGTAGGCACCATCAATA128050.21282487164025898No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGACAACTGTAGGCACCATCAA126140.20965036555019345No Hit
GTTTCCGTAGTGTAGCGGTTATCACATTCGAACTGTAGGCACCATCAATT114330.1900216132341336No Hit
GTTTCCGTAGTGTAGCGGTTATCACATTCGAACTGTAGGCACCATCAATC105980.17614353687180512No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATGG103630.17223773094947317No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGTTTAACTGTAGGCACCATC99230.16492473262680907No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGTAACTGTAGGCACCATCAA94760.15749539114901165No Hit
TCCCATATGGTCTAGCGGTTAGGATTCCTGGAACTGTAGGCACCATCAAT88130.1464760323128155No Hit
AGTAAGGTCAGCTAAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGT85720.14247050368608355No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCAACTGTAGGCACCATCAA84760.14087494041568413No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGTAACTGTAGGCACCATCAA74480.12378911706182343No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAAACTGTAGGCACCATCAAT70830.11772265254415888No Hit
GTTTCCGTAGTGTAGCGGTTATCACATTCGAACTGTAGGCACCATCAATG69120.11488055546875987No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA69020.1147143509614266No Hit
GTTTCCGTAGTGTAGCGGTTATCACATTCGCAACTGTAGGCACCATCAAT62760.10430994880236356No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAA61640.10244845832023088No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCCAACTGTAGGCACCATCAA60360.10032104062636495No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)