FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007277487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007277487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1502766
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC48680.3239359953578934No Hit
AGCTCCGAGGTGATTTTCATATTGAATTGCAAATTCGAAGAAGCAGCTTC29780.1981679117041509No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTAACTGTAGGCACCATCA21840.145332007777658No Hit
AGTAAGGTCAGCTAAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGT17020.1132578192479734No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)