FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007277502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007277502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6906890
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCCGCTGGTGTAGTGGTATCATGCAAGATTAACTGTAGGCACCATCAA4821386.98053682627058No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCAACTGTAGGCACCATCAA2742303.970383197068435No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCAACTGTAGGCACCATCAA2162833.1314093607976963No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTAACTGTAGGCACCATCA2146973.1084467828501685No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAAT1409732.0410488656978756No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGCAACTGTAGGCACCATCAAT1267801.835558406171229No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATTCAACTGTAGGCACCATCA942891.3651440807657282No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGTTTAACTGTAGGCACCATC931721.3489718237875512No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA915171.3250102433946394No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAAT839941.2160900202551366No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAAT769841.114597163122621No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTAACTGTAGGCACCATCA656250.9501381953382783No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGTAACTGTAGGCACCATCAA618130.8949469298048761No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGCCTAACTGTAGGCACCATCA606200.8776743223071456No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGTTAACTGTAGGCACCATCA602780.872722744969154No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCCAACTGTAGGCACCATCAA590100.8543642652481797No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCAACTGTAGGCACCATC526480.7622533441244902No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA524820.759849946937044No Hit
GTTTCCGTAGTGTAGCGGTTATCACATTCGCCAACTGTAGGCACCATCAA434400.628937191702778No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCCTAACTGTAGGCACCATCA427930.6195697339902619No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATTCCAACTGTAGGCACCATC400460.579797854026921No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGAACTGTAGGCACCATCA373480.5407354105827659No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGACAACTGTAGGCACCATCAA332570.48150470037889703No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGCTAACTGTAGGCACCATCAA295210.42741378536504854No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCAACTGTAGGCACCATCAAT291620.4222160769897885No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGCCAACTGTAGGCACCATCAA256630.3715565182013902No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTGAACTGTAGGCACCATCA249060.36059644789478335No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTGCAACTGTAGGCACCATC223980.32428488074951245No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACAACTGTAGGCACCATCAA221590.3208245679314424No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGAAACTGTAGGCACCATCAATA217590.31503324940747574No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAATA204320.2958205502042164No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATA191920.27786746277991975No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGAAACTGTAGGCACCATCAATT184860.2676457855851186No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATAACTGTAGGCACCATCAAT179300.25959585283680503No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAATT176650.2557591043146771No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATT172480.24972165475344185No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGAAACTGTAGGCACCATCAATC166910.2416572437088183No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATC162540.23533022822138472No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAATC162330.23502618399887648No Hit
TCCCCTGTGGTCTAGTGGTTAGGATTCGGCGCAACTGTAGGCACCATCAA151880.21989636435501364No Hit
TCCCATATGGTCTAGCGGTTAGGATTCCTGGTTTAACTGTAGGCACCATC139550.20204462500488643No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGAAACTGTAGGCACCATCAATG124530.18029822394739167No Hit
GCGTTGGTGGTATAGTGGTGAGCATAGCTGCCTTAACTGTAGGCACCATC124180.1797914835765446No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGTTTTAACTGTAGGCACCAT122160.1768668677219414No Hit
GCGTTGGTGGTATAGTGGTGAGCATAGCTGCCAACTGTAGGCACCATCAA118950.1722193346064582No Hit
GTTTCCGTAGTGTAGCGGTTATCACATTCGCCTAACTGTAGGCACCATCA118410.17143750660572268No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAATG115880.1677744976393138No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATG112240.16250439778250414No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAACTGTAGGCACCATCA105160.15225376399508317No Hit
TCCCATATGGTCTAGCGGTTAGGATTCCTGGTTAACTGTAGGCACCATCA103730.15018336762276507No Hit
TCCCATATGGTCTAGCGGTTAGGATTCCTGGTAACTGTAGGCACCATCAA96860.14023677805785237No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATTCCCAACTGTAGGCACCAT94790.13723977072169963No Hit
GCGTTGGTGGTATAGTGGTTAGCATAGCTGCCTTAACTGTAGGCACCATC93700.1356616364239187No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACAACTGTAGGCACCATCAA91450.13240401975418747No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTAACTGTAGGCACCATCA87930.12730765945309686No Hit
TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGAACTGTAGGCACCATC84020.12164664559591945No Hit
TCCCCTGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAAT79290.11479841144132888No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCAACTGTAGGCACCATCAATA78900.11423375788524213No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTCAACTGTAGGCACCATC73650.10663265232253591No Hit
GCGTTGGTGGTATAGTGGTTAGCATAGCTGCCAACTGTAGGCACCATCAA70400.101927206021813No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)