FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007277531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007277531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7383085
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAAACTGTAGGCACCATCAAT853591.1561427235362995No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCAACTGTAGGCACCATCAA827951.1214146931804252No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGACAACTGTAGGCACCATCAA778511.0544508156143402No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAA777651.0532859908832148No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTAACTGTAGGCACCATCA680980.922351564420564No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATTA647430.8769098554330609No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAC598390.8104877568116851No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATCC578830.7839947664153942No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATTT565750.7662785949233958No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAT542450.7347199713940716No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATCA520260.7046647844363162No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATTC487200.6598867546560822No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATGA477900.6472903941915878No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAG477160.6462881031438754No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATCG419810.5686105469461614No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATTG379200.5136064395845368No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATGT374400.5071050922480237No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCAACTGTAGGCACCATCAAT361470.4895920878602915No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATTAACTGTAGGCACCATCAA333830.45215516278087003No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATA326090.4416717402007426No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATGC314420.42586533948884514No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATCT293510.3975438451541598No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATT283330.3837555710113049No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATC260770.3531992385296932No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGAACTGTAGGCACCATCAAT188770.25567902848199636No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATG183870.24904223640930587No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAAT181740.24615726352872816No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATGG169180.22914540466485214No Hit
GCCCGGATGATCCTCAGTGGTCTGGGGTGCAGGAACTGTAGGCACCATCA147040.1991579400751854No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGAACTGTAGGCACCATCAATA140330.19006959827768474No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGAACTGTAGGCACCATCAATC123350.16707108207476956No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGAACTGTAGGCACCATCAATT116200.15738678343808854No Hit
GTTTCCGTAGTGTAGCGGTTATCACATTCGCCAACTGTAGGCACCATCAA112420.15226697241058446No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTAACTGTAGGCACCATCAATAAAA112180.15194190504375882No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAACTGTAGGCACCATCAATA99520.13479460144370545No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA99410.13464561223391036No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCCAACTGTAGGCACCATCAA98700.13368395460705113No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA98100.13287128618998698No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTAACTGTAGGCACCATCAATCCCC87620.11867667783859999No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAACTGTAGGCACCATCAATT85560.11588651627334644No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATAACTGTAGGCACCAT84180.11401737891409891No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTAACTGTAGGCACCATCAATTAAA82950.11235140865911743No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAA82680.11198570787143856No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTAACTGTAGGCACCATCAATATAA81730.11069898287775366No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTAACTGTAGGCACCATCAATAATA80070.10845060025720955No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTAACTGTAGGCACCATCAATAAAC80030.10839642236273861No Hit
TCCCATATGGTCTAGCGGTTAGGATTCCTGGAACTGTAGGCACCATCAAT79600.10781400999717598No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAACTGTAGGCACCATCAATC78260.1059990505323994No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGAACTGTAGGCACCATCAATG77320.10472587001233225No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTAACTGTAGGCACCATCAATAACA77210.10457688080253716No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCAACTGTAGGCACCATCAATAAA77020.10431953580380018No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGAAACTGTAGGCACCATCAATA75270.10194925292069644No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTAACTGTAGGCACCATCAATCGAC74370.10073025029510022No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)