FastQCFastQC Report
Thu 12 Jan 2023
EGAF00007277535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007277535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7623564
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAAT5679087.449376695729189No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAAT1867722.4499302426004426No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA1710462.2436487710997115No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATTAACTGTAGGCACCATCAA757710.9939052128374603No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATA716310.9395999036671038No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATT631070.8277886825636934No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA623410.8177408886447336No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATC617900.81051329797979No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA548650.7196765187515971No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATG419770.5506217302038784No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAACTGTAGGCACC336160.44094861668374535No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGCCTAACTGTAGGCACCATCA300650.3943693527069491No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGCCAACTGTAGGCACCATCAA248600.3260941995108849No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATAACTGTAGGCACCAT237260.31121926699900465No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATA231280.3033751667855087No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATT205220.26919167990194615No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTAACTGTAGGCACCA196860.2582256802723765No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATC195580.2565466755444042No Hit
GCATTTGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAAT172320.22603601150328112No Hit
TCCCTGGTGGTCTAGTGGTAGGATTCGGCGCAACTGTAGGCACCATCAAT154380.20250371086279328No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATG139290.18270981918693147No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC124460.16325697534643901No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCAACTGTAGGCACCATCAA121940.1599514347882434No Hit
GCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAACTGTAG108350.14212512677797418No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGCCTGAACTGTAGGCACCATC97890.12840451001657494No Hit
GCATTGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAATA83030.10891231450277063No Hit
GCATTGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAAT81990.10754812316129307No Hit
GCCCGGATGATCCTCAGTGGTCTGGGGTGCAGGCTAACTGTAGGCACCAT76820.10076651812721714No Hit
GCGTTGGTGGTATAGTGGTGAGCATAGCTGCCAACTGTAGGCACCATCAA76570.10043858751628504No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)