FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007277574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007277574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6316254
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTCAACTGTAGGCACCATC212740.33681356069594415No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTAACTGTAGGCACCATCA206280.32658597960120034No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCAACTGTAGGCACCATC186680.295554928601668No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA169390.26818110861279487No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCCTCAACTGTAGGCACCATC112660.17836521457180157No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTGACAACTGTAGGCACCA65570.10381153132853745No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCCTAACTGTAGGCACCATCA64160.10157919551683639No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)