FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007277582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007277582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9600677
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTAACTGTAGGCACCATCA857510.8931765957754854No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA804030.837472190763214No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCAACTGTAGGCACCATC763920.7956938870040102No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTAACTGTAGGCACCATCA730600.7609880011586684No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCAACTGTAGGCACCATC687920.7165328028429662No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCAACTGTAGGCACCATC613890.6394236573108334No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGACAACTGTAGGCACCATCAA354120.3688489884619595No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTAACTGTAGGCACCAT330240.3439757425439893No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCAACTGTAGGCACCATCAA256530.2671999068399031No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC225370.23474386233387498No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTCAACTGTAGGCACCATC211140.21992199091793213No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTAACTGTAGGCACCAT202650.21107886454257338No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA185500.19321554094570623No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGAACTGTAGGCACCATCA169670.17672712038953087No Hit
TCTGAGTCTTAAGCTAATTTTTTGAGGCCTTGTTCCGACAAGGCTAAACT168430.17543554480585066No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTAACTGTAGGCACCATCA148790.15497865410949666No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGCCTAACTGTAGGCACCATCA148060.15421829106426557No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCCTAACTGTAGGCACCATCA146480.15257257378828598No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTGAACTGTAGGCACCATC132030.13752155186556114No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACAACTGTAGGCACCATCAA124670.12985542582049162No Hit
ATACATGATGATCTCAATCCAACTTGAACTCTCTCACTGATTACTTGATG123900.12905339904675472No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCAACTGTAGGCACCAT123140.12826178820514428No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGCCTGAACTGTAGGCACCATC111840.1164917849022522No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCAACTGTAGGCACCATCAA104310.10864858801103297No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTGCAACTGTAGGCACCATC101780.10601335718304031No Hit
GCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAACTGTAG100160.10432597617855491No Hit
AATCAATGATGAAACCTATCCCGAAGCTGATAACCTGAAGAAAAATAAGT98390.1024823561921727No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)