FastQCFastQC Report
Wed 4 Jan 2023
EGAF00007277583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007277583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8036989
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA3244654.0371462496713635No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCAACTGTAGGCACCATC2637313.2814652353014293No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTAACTGTAGGCACCATCA1512861.8823716195206934No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA716380.8913537146809583No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTAACTGTAGGCACCATCA612340.7619022497106814No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTGCAACTGTAGGCACCATC507620.6316046967340629No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC431270.5366064330808465No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCCTAACTGTAGGCACCATCA315710.3928212418854872No Hit
GCATTTGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA284120.3535154770026437No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGCTAACTGTAGGCACCATCAA281660.3504546292149958No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTCAACTGTAGGCACCATC271790.33817391065235997No Hit
TCGTACGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAAC256820.3195475320421616No Hit
GCATTGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAAT227520.28309109294538043No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCAACTGTAGGCACCAT225260.28027909457136246No Hit
GCATTTGTGGTTCAGTGGTAGAATTCTCGCCTGCAACTGTAGGCACCATC207890.2586665229976052No Hit
GCATTGTGGTTCAGTGGTAGAATTCTCGCCTGCAACTGTAGGCACCATCA189030.2352000232923051No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATTAACTGTAGGCACCATCAA155670.1936919410988369No Hit
GTTTCCGTAGTGTAGCGGTTATCACATTCGCCTAACTGTAGGCACCATCA151420.1884038910592014No Hit
GTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGAA142140.17685727826677378No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGCCTAACTGTAGGCACCATCA140180.17441855401320072No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTGACAACTGTAGGCACCA101530.1263284048292215No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCCTCAACTGTAGGCACCATC98170.12214773468023907No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGTTTTAACTGTAGGCACCAT96830.12048044360891871No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGAACTGTAGGCACCATCA86580.10772691116038606No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTAACTGTAGGCACCATCA82610.10278725029983243No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)