FastQCFastQC Report
Thu 9 May 2024
EGAF00007277593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007277593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7993171
Total Bases607.4 Mbp
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAAT784750.9817755681693786No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATA628280.7860209671480817No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATC575120.7195141953049672No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGCCTAACTGTAGGCACCATCA566080.7082045411013976No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATT561750.7027874169087588No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGCCAACTGTAGGCACCATCAA410160.5131380274486809No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATG364730.4563020108039726No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCAACTGTAGGCACCATCAAT320740.40126753199700094No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTAACTGTAGGCACCATCAA289560.36225923353822903No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGAACTGTAGGCACCATCAAT145690.1822680885971287No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGCCTGAACTGTAGGCACCATC143490.17951573912280872No Hit
GCGTTGGTGGTATAGTGGTGAGCATAGCTGCCAACTGTAGGCACCATCAA139180.17412363628902722No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCAACTGTAGGCACCATCAA138710.17353563435587704No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATTAACTGTAGGCACCATCAA135110.16903178976153518No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCAACTGTAGGCACCATCAA130030.1626763646117417No Hit
TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCAACTGTAGGCACCATCAA128510.16077474133857514No Hit
TCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAACTGT103860.12993591654676223No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATA101760.1273086738667295No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGAACTGTAGGCACCATCAATAA94940.11877639049633743No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGCAACTGTAGGCACCATCAAT92780.11607408373973233No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATC90780.11357194785398686No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCAACTGTAGGCACCATCAATT89410.11185798477225121No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGTAACTGTAGGCACCATCAA82380.1030629771338559No Hit
GCGTTGGTGGTATAGTGGTGAGCATAGCTGCAACTGTAGGCACCATCAAT81500.10196203734412787No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)