FastQCFastQC Report
Wed 2 Nov 2022
EGAF00007294408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007294408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2820386
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAG48770.1729195932755304No Hit
GAATGTAAATGCAATTTTATTTACCACTTTGATGCTCCAAATGGCACTGC42160.14948308493943735No Hit
TTGGAGGTGTCTTGAGTGCACTGTGTGTGAGGCCTGTGGGAAGGCAACTG42130.1493767165203628No Hit
CACCTTGGAGCCACTATCAAATGCTGTGAAGAGAAATGTACCCAGATGTA41590.14746208497702087No Hit
GGACAAAGCAGGAAGATGTGACTGAAATCCTGAAAGGAGCCGGCTCCTGC39740.14090269913409015No Hit
CCTTCATTTACACAGGGTTCATAGCCATCTCGACACTGCAATGCTAAAAA37620.13338599751948846No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN37120.1316131905349126No Hit
GCAGCAGCTAAACCAGTTCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGC34010.12058633109085068No Hit
GGAGTCTTCCTGGGTCAGTTGCCTTCCCACAGGCCTCACACACAGTGCAC33860.12005448899547791No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)