FastQCFastQC Report
Wed 2 Nov 2022
EGAF00007294420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007294420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5673046
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTCTTAGTAATAGCTGGTTTACCCATGCCAATTTTTGGAGTGACTGA122940.2167089778577505No Hit
GAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAG116040.2045461996958953No Hit
GCTGCATAATTACCCTTCAGCTCTTAGTTCCTCTGCTGGAAACATCATGC115730.20399975603934817No Hit
TTGGAGGTGTCTTGAGTGCACTGTGTGTGAGGCCTGTGGGAAGGCAACTG97620.1720768701681601No Hit
CACCTTGGAGCCACTATCAAATGCTGTGAAGAGAAATGTACCCAGATGTA93610.16500835706250222No Hit
GGAGTCTTCCTGGGTCAGTTGCCTTCCCACAGGCCTCACACACAGTGCAC76120.1341783585044084No Hit
CCAAGAGGGTTCAAATGAAAGCCGAGTTGTAACTATCCATAAGCAAGATG71610.1262284846623842No Hit
GAATGTAAATGCAATTTTATTTACCACTTTGATGCTCCAAATGGCACTGC70990.12513559734928995No Hit
AGATGTTTGGAGCTTTGGAGTGGTTCTGTATGAACTTTTCACATACATTG70250.12383118345946781No Hit
TAAAATATGTTCTGTTTTCTTAACTTCAGGATATGTGTGTAGTTTGTGGC68480.12071116645273104No Hit
CCGCGGCTGAGTGAGGAGGCACACGCCTGTAACCCCAGCCCTTTGGAAGG66560.11732674122508437No Hit
CTGCATCCACGTCCGCACCGCGTTCATGCCGCTGCCCAGCGGCTCTTCCT63890.11262027489288823No Hit
GTCTGAGCGAACAGTTTCCATCTGGTAACAATTCAAAAGATCTTTAAGAC63230.1114568787208847No Hit
GGACAAAGCAGGAAGATGTGACTGAAATCCTGAAAGGAGCCGGCTCCTGC62710.11054026355506372No Hit
GAATAAATCTGCGAAATCTGTACCTTATTCGCTTCCTTGTCAAAATATGA62070.10941212181251483No Hit
AACCTGCACGTTTTAATGGAGTAACCGCTATATCCAGGCACATTCCATGA61520.10844262500251188No Hit
AGGAACTGTTACACATGTAGTTGTAGTGGATGGTGGTACAGTCAGAGCCA61250.10796669020487405No Hit
GCTCTTTTACTTTTGTGACAATTTGTGCTACAAGTGAAGATCCACAGCAG61000.1075260098366909No Hit
CCTTCATTTACACAGGGTTCATAGCCATCTCGACACTGCAATGCTAAAAA60190.10609820544377746No Hit
TATGAAACCATTGCTTTTAGAATAATCATGGGCCAGACTGGGAAGAAATC60050.10585142443759489No Hit
ACTAATAAGTGTGACATACTAACCTCGACAGCAAAAGTCAAAAAATATTT58400.10294293400758604No Hit
CTTGTAGATTTTACTTTCCTCGTTGGTATTGCAGTGGCAGCAACAGAGCC57710.10172665619140053No Hit
TCCACAGGGATCTGGCAACGAGAAATATATTGGTGGAGAACGAGAACAGA57100.10065139609303363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)