FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007294530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007294530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11514936
Sequences flagged as poor quality0
Sequence length35-151
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCGGCTGAGTGAGGAGGCACACGCCTGTAACCCCAGCCCTTTGGAAGG476410.4137322170092826No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN453240.3936105246264504No Hit
GAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAG184680.16038300169449488No Hit
TTGGAGGTGTCTTGAGTGCACTGTGTGTGAGGCCTGTGGGAAGGCAACTG145210.12610578122188434No Hit
GCTGCCCATACTTACCTGCACGAGAATGAGTTTGGAGCGCAAGGGGGCCA138370.12016567004801418No Hit
AGGAACTGTTACACATGTAGTTGTAGTGGATGGTGGTACAGTCAGAGCCA124680.10827676332721259No Hit
GGAGTCTTCCTGGGTCAGTTGCCTTCCCACAGGCCTCACACACAGTGCAC119120.10344825190517777No Hit
GCCTTTGAGACTGGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGC117150.10173743041211868No Hit
GTGAGGGTGGGCGAGAATAAGGGTCAGGGGACTGGAAGCGAGGGGTAACG115750.10052161818354874No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)