FastQCFastQC Report
Thu 3 Nov 2022
EGAF00007294556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007294556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9204387
Sequences flagged as poor quality0
Sequence length35-151
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCGGCTGAGTGAGGAGGCACACGCCTGTAACCCCAGCCCTTTGGAAGG283890.30842901325205035No Hit
GGCACAAGGAAGCGCTCTTGACTCGGCATGGTACCATGACTACCTCCTGG254400.2763899431868738No Hit
ATTGTTGTCTTGGTTGCCATGGACGATGACCACCAGGGGCAGAGACAGGG174670.18976820509611342No Hit
GAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAG154680.16805030036220772No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN120940.1313938668593574No Hit
TTGGAGGTGTCTTGAGTGCACTGTGTGTGAGGCCTGTGGGAAGGCAACTG118380.12861258441219386No Hit
CTGCATCCACGTCCGCACCGCGTTCATGCCGCTGCCCAGCGGCTCTTCCT108830.11823709715812689No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)