FastQCFastQC Report
Wed 2 Nov 2022
EGAF00007294566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007294566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8065146
Sequences flagged as poor quality0
Sequence length35-151
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCACAAGGAAGCGCTCTTGACTCGGCATGGTACCATGACTACCTCCTGG140290.17394601412051314No Hit
CGCAAGTCCAAGGAGATCGACAAATGCCTGTCTCGGGAAAAGACCTATGT132860.16473353365208765No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN120230.14907355675892292No Hit
CGAAGAAGAGCGCTAAGAAAACACCGAAGAAAGCGAAGAAGCCGGCCGCG104700.12981786070580742No Hit
CCGCTTCACATAGGTCTTTTCCCGAGACAGGCATTTGTCGATCTCCTTGG96310.11941507320512239No Hit
TGGCTGCTTTCGCCTTTTTCGGGCTTTTCGCTTTTTTGGCTCCAGCAGCT95260.1181131748885885No Hit
GTAATAACAAAATAACACGGCATCCCAGTTAATGCTGCGTGCACGGCGGG90700.11245921648535563No Hit
GCAGCAGCTAAACCAGTTCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGC88170.10932226149408827No Hit
GGGCTTGGCGGTCTTTGGTTTAGCCGCCTTGGGTTTAACTGCTTTGGCCT83830.1039410817857482No Hit
GAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAG82410.10218041930053096No Hit
GATTCGAGCTGGGAATCAAGGATCCCAGTGCGGGACGCGGCCTCACCCAA80770.10014697812042088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)