FastQCFastQC Report
Wed 2 Nov 2022
EGAF00007294570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007294570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3499129
Sequences flagged as poor quality0
Sequence length35-151
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN74650.21333880517122977No Hit
CCAGGTAGCGGTCCAGACTGATGAAGGCCAGGATGAGGACACTGCTGTAG47570.1359481173743523No Hit
GAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAG41500.11860094326330924No Hit
CACCTTGGAGCCACTATCAAATGCTGTGAAGAGAAATGTACCCAGATGTA40290.11514293985731877No Hit
TTGGAGGTGTCTTGAGTGCACTGTGTGTGAGGCCTGTGGGAAGGCAACTG39870.113942641154413No Hit
TGCGCCGACATCCTGGAGGTTGGGATGCTCTTGTCCAAAATCAACTCGCT35430.10125376915226618No Hit
CCTCAGGTGGTGGAGATCGACCCGGACTTCGAGCCGCTGCCCCGGCCGCG35410.10119661207117542No Hit
GGAGTCTTCCTGGGTCAGTTGCCTTCCCACAGGCCTCACACACAGTGCAC35250.10073935542244941No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)