FastQCFastQC Report
Sat 4 Feb 2023
EGAF00007294759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007294759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11748678
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCGTAT121040110.302444240960558TruSeq Adapter, Index 8 (97% over 36bp)
NATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCGTAT132440.11272757666862604TruSeq Adapter, Index 3 (97% over 34bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCGTA125830.1071014117503263TruSeq Adapter, Index 8 (97% over 36bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)