FastQCFastQC Report
Thu 5 Jan 2023
EGAF00007326638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007326638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76787820
Sequences flagged as poor quality0
Sequence length75
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTATGGCCCGGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTAAGACCGTCTGGAGAACACTTGCCCA2007200.26139562237865327No Hit
AGTATGGCCCGGGGGATCCTAGAGACCATTCGCGATTCCATGAGACTCCAAGGGTTCTGCACAACTTATGCACCT1891010.24626431639809543No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTGAGGGTTATAAGCTGGGTAGTATTAC1802920.23479244494764925No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCGTCTTCAGAGGGGGATAGCATGACCTCACGCCTTCTATAAAA1690240.22011824271088826No Hit
AGTATGGCCCGGGGGATCCGTATACGTTTCTAATTTGTAGTTAACGGTTGGATACCACTTTGAGGCATGTAATAT1212970.15796385416332956No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCAGAAGACCTAAGCTAGCGTTTAGAGTGCAATTTTGTCAGCAG1138550.14827221296294127No Hit
GGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTAAGACCGTCTGGAGAACACTTGCCCATCAGTGCTTT917110.11943430611781922No Hit
GGGGGATCCTAGAGACCATTCGCGATTCCATGAGACTCCAAGGGTTCTGCACAACTTATGCACCTCTATTAGATC792520.10320907664783294No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)