FastQCFastQC Report
Tue 18 Jul 2023
EGAF00007326703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007326703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78675999
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGCTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTGATGAGTTTGCTAATACAATGCCAGTCAGGCC1386430.17622019645406728No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGTCCGTGGAAGCCTGTGGCTACAAAAA922410.11724159994460318No Hit
GGCCAATTGATTTGATGGTAAGGGAGGGATCGTTGACCTCGTCTGTTATGTAAAGGATGCGTAGGGATGGGAGGG916430.11648152062231837No Hit
CCCAGGTTATGCATAAGCTGTATTTCACTCACAGATCTCTTCTTAACAGATTTCCCATCCGATTTTGTAAGAAAA807120.10258782986664078No Hit
GTGGGAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATTTTGGCGTAGGTTTGGTCTAGGGTGT794490.10098251183311953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)