FastQCFastQC Report
Fri 13 Jan 2023
EGAF00007326735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007326735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65799074
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATTTTCTGGTATTTTCCCAGGTGATTCTCTTCCAACCTGTGAGTCCTGCTCTCTTTCCTCCCATCTGAAGTT1325850.20149979618254202No Hit
CTCAAATGATCAGCACATTCAGAAGCAGGACAGAGGAGCTCTGATGACATCTCTGGGGGACTCAAAGCGGCCCTC1050520.15965574226774074No Hit
CTGCTCTCTTTCCTCCCATCTGAAGTTTGAGACATCCTCTGCCACAAGGAAAGCCACCAATACCAGCCCAAAGAG819020.12447287632041752No Hit
CTTTTCTTTCCAGGTGCTCCAACCCCAATTGCAGTTTGGGGGAACGTGTGAAACTTGTTGAAGTCCTGCGTGTAT789820.12003512389855214No Hit
GTTTAGTTGGCATTCTGGGGCATGCTAACATGAGGGCGATGGTCTCTCTCCAAGTCGCTGGACATATCCCTTTTC741730.11272651040651423No Hit
CACATTCAGAAGCAGGACAGAGGAGCTCTGATGACATCTCTGGGGGACTCAAAGCGGCCCTCATTTTCTGGTATT740520.11254261724108763No Hit
AGCACATTCAGAAGCAGGACAGAGGAGCTCTGATGACATCTCTGGGGGACTCAAAGCGGCCCTCATTTTCTGGTA712070.1082188481862222No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)