FastQCFastQC Report
Fri 13 Jan 2023
EGAF00007326869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007326869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68753147
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACTGGATGCATCTGCAGGATATCGCGGCCGCTCTAAACGTGGTAAATTGTTAACTCCGAGCTAGACTTCAGGT1111980.1617351421019317No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCAGAAGACCTAAGCTAGCGTTTAGAGTGCAATTTTGTCAGCAG1108200.1611853490866389No Hit
AGTATGGCCCGGGGGATCCGTATACGTTTCTAATTTGTAGTTAACGGTTGGATACCACTTTGAGGCATGTAATAT1093110.15899054046209696No Hit
AGTATGGCCCGGGGGATCCGTTAGCTATCGTTCGCGAGAAAGTTAGTAGACACACAGGACCCAGGCGTGCAAGTC1079750.15704735668317843No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCGTCTTCAGAGGGGGATAGCATGACCTCACGCCTTCTATAAAA881410.12819922264794656No Hit
AGTATGGCCCGGGGGATCCTTGGACCGTTAATTCATATATCGAAGTAGCAGGTTGTTGCCCCGCCTGATGTTGCC877780.1276712468158003No Hit
GGGAGGAGTTTAGTTGGCATTCTGGGGCATGCTAACATGAGGGCGATGGTCTCTCTCCAAGTCGCTGGACATATC870590.1266254765036428No Hit
AGTATGGCCCGGGGGATCCTAGAGACCATTCGCGATTCCATGAGACTCCAAGGGTTCTGCACAACTTATGCACCT859650.12503427661282182No Hit
AGTATGGCCCGGGGGATCCGCTCGCACTTAGCCTGTTAAGGGGTTCGCGCTCGTCTAGTCTGTGCTGTTGCCTGG852610.12401032348381086No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCGAGTCACTGTTAGAAGTCCCGTATCGTTATTGACATATTTCC842630.12255875356512773No Hit
GCCACCAATACCAGCCCAAAGAGCCACCAGAGAGGAACCAAACCACATGCATCAAGTTATAGGAAGGATGCAAGA839420.12209186584579176No Hit
AGCACATTCAGAAGCAGGACAGAGGAGCTCTGATGACATCTCTGGGGGACTCAAAGCGGCCCTCATTTTCTGGTA834570.12138644359072029No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCACGCCCATATAAACGATCGGATAAATAGCTGAATTTCCATGC784740.11413877534943964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)