FastQCFastQC Report
Fri 13 Jan 2023
EGAF00007330482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007330482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70855207
Sequences flagged as poor quality0
Sequence length75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTATGGCCCGGGGGATCCGTATACGTTTCTAATTTGTAGTTAACGGTTGGATACCACTTTGAGGCATGTAATAT5366370.7573712966500824No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCAGAAGACCTAAGCTAGCGTTTAGAGTGCAATTTTGTCAGCAG5327430.7518755819879265No Hit
GATCCGTATACGTTTCTAATTTGTAGTTAACGGTTGGATACCACTTTGAGGCATGTAATATGGTACTGAGCTTCG4705990.6641699600143712No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCGTCTTCAGAGGGGGATAGCATGACCTCACGCCTTCTATAAAA4428870.6250592140673585No Hit
AGTATGGCCCGGGGGATCCTAGAGACCATTCGCGATTCCATGAGACTCCAAGGGTTCTGCACAACTTATGCACCT4385410.6189255787510437No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCTCTAAACGTGGTAAATTGTTAACTCCGAGCTAGACTTCAGGT3991530.5633361567908481No Hit
GATCCGTTAGCTATCGTTCGCGAGAAAGTTAGTAGACACACAGGACCCAGGCGTGCAAGTCAATTTCAGCTGACT3748590.5290493329586914No Hit
AGTATGGCCCGGGGGATCCGTTAGCTATCGTTCGCGAGAAAGTTAGTAGACACACAGGACCCAGGCGTGCAAGTC3689010.5206406354863942No Hit
CTGCAGGATATCGCGGCCGCAGAAGACCTAAGCTAGCGTTTAGAGTGCAATTTTGTCAGCAGCCATACTCTAAGC2925080.41282498828914577No Hit
CTGCAGGATATCGCGGCCGCTCTAAACGTGGTAAATTGTTAACTCCGAGCTAGACTTCAGGTGGCCGTATTTATC2804430.3957973053412997No Hit
CTGCAGGATATCGCGGCCGCGTCTTCAGAGGGGGATAGCATGACCTCACGCCTTCTATAAAAGCCCTCCCTTAGT2615080.36907379298179177No Hit
GATCCGCTCGCACTTAGCCTGTTAAGGGGTTCGCGCTCGTCTAGTCTGTGCTGTTGCCTGGATAGTAAATTATCA2365510.3338512581016099No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCACGCCCATATAAACGATCGGATAAATAGCTGAATTTCCATGC1877770.2650151032654523No Hit
AGTATGGCCCGGGGGATCCGCTCGCACTTAGCCTGTTAAGGGGTTCGCGCTCGTCTAGTCTGTGCTGTTGCCTGG1758170.24813560985009897No Hit
GATCCTAGAGACCATTCGCGATTCCATGAGACTCCAAGGGTTCTGCACAACTTATGCACCTCTATTAGATCATTG1741120.2457292941081945No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTGAGGGTTATAAGCTGGGTAGTATTAC1703300.24039164828069726No Hit
AGTATGGCCCGGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTAAGACCGTCTGGAGAACACTTGCCCA1594250.22500110683467486No Hit
CTGCAGGATATCGCGGCCGCACGCCCATATAAACGATCGGATAAATAGCTGAATTTCCATGCCTTACGCGGTTGT1484040.20944685123847No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCTCTAAACGTGGTAAATTGTTAACTCCGAGCT1321920.18656638742160475No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCAGAAGACCTAAGCTAGCGTTTAGAGTGCAAT1072710.15139466038113472No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCGTCTTCAGAGGGGGATAGCATGACCTCACGC952120.134375445406574No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCGAGTCACTGTTAGAAGTCCCGTATCGTTATTGACATATTTCC866500.12229164752845897No Hit
GATCCTTGGACCGTTAATTCATATATCGAAGTAGCAGGTTGTTGCCCCGCCTGATGTTGCCACTACTTGCTCATG839460.118475414234553No Hit
CTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTGAGGGTTATAAGCTGGGTAGTATTACTCCTACTAACGGG733390.10350544879503351No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCACGCCCATATAAACGATCGGATAAATAGCTG721410.10181467679573641No Hit
CTAGTATGGCCCGGGGGATCCGTATACGTTTCTAATTTGTAGTTAACGGTTGGATACCACTTTGAGGCATGTAAT710850.1003243134975246No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)