FastQCFastQC Report
Fri 13 Jan 2023
EGAF00007330516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007330516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74858842
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGAAACACACCCCTGGAATAAGCCGAG2083110.27827173709152486No Hit
CTTACTTTCAACAAAATCAGCAGCTAATGAAGGCAAGTCAGCAGGCATCTCATCATTTTCCACTTCGGCAATGCA988990.13211398594704415No Hit
GGACACTGCTGAAGATACTGAGCAAAGGCAATCAACACCAAGGCTTTGAAATTTTCTTCTCCCAAATCTTTAAAC862780.11525425413339949No Hit
CAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGAAACACACCCCTGGAATAAGCCGAGCT777630.10387951232267258No Hit
CTCCAAAAAGGGTATGAAGTGATTTGTCACAATTTTCAGCTGACTCATCAGCAACACATGTTTTTGCAAATTCAG759930.10151506217528719No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)