FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3228209
Sequences flagged as poor quality0
Sequence length8-150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC133060.4121790131927642No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC54120.16764713808802342No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37550.11631836724326089No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT36250.11229136651313468No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC34330.10634379620402522No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGACCCACCAATCACATGCCTA33240.10296731097645784No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)