FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1803455
Sequences flagged as poor quality0
Sequence length8-150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCCGGCTGACCCTGCGCAGATTAACTTTACGCAGGAACCCTTGGACTT74850.4150366934578351No Hit
AGAGCGAACGCTGGCGGCAGGCTTAACACATGCAAGTCGAACGGGCACTT73680.4085491459448669No Hit
AGGCGAGTCCGAAAGGAGTAGTCGATGGGAACCAGGTGAATATTCCTGGG58660.3252645616330876No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC38880.2155861942770959No Hit
TTACCTCTTCCGGTCTCAAGCCAAACAGTATCAAAGGCAATTCCAAGGTT34060.18885971648862876No Hit
GGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAG25580.14183885930062018No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21090.11694220260555434No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCTTTACAATGGAGAGTTTGATCCT18800.10424435319983032No Hit
CGGCCCCCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG18320.10158279524579211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)