FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335259

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335259
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3533050
Sequences flagged as poor quality0
Sequence length8-150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC286050.8096403956921074No Hit
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC144080.40780628635315097No Hit
CCCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTT108660.3075529641527858No Hit
TCTAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTA85350.2415759754319922No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG84370.23880216809838523No Hit
CGGCCCCCCTATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTT76480.21647018864720283No Hit
AAGAGCTACTGGGAAGGGGGAGCTCAGTCTGAACCTGGGGGATCAGGGGA70200.19869517838694614No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC69960.1980158786317771No Hit
CGGCCCCCCATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAG67690.19159083511413652No Hit
ATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTG66050.18694895345381468No Hit
CGGCCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTT65480.1853356165352882No Hit
CGGCCCCCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTG55620.15742771826042654No Hit
TGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTC50200.14208686545619226No Hit
TGGCGCAATGAAGGTGAAGGCCGGCGCGCTCGCCGGCCGAGGTGGGATCC49050.13883188746267391No Hit
TGGCGCACGGGTGCGTAACGCGTGGGAATCTGCCCTTGGGTTCGGAATAA47490.13441643905407508No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT43290.12252869333861677No Hit
AGAGCTACTGGGAAGGGGGAGCTCAGTCTGAACCTGGGGGATCAGGGGAG42440.12012284003905974No Hit
CCTGGCAGATGCTCTCAAGAGTATCAACAATGCCGAAAAGAGAGGCAAAC38010.10758409872489774No Hit
CGGCCCCCCAAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACG37010.10475368307836005No Hit
TTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTGT35600.10076279701674191No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)