FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007335270

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007335270
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3003633
Sequences flagged as poor quality0
Sequence length8-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCC141080.4696978625551124No Hit
AGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGC98210.3269707051427388No Hit
TGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGT65490.2180359584543118No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65330.2175032702064467No Hit
TCAGAATTCATGCCCCCCCGGCCCCCCATGGCACATGCAGCGCAAGTAGG46920.1562108286864607No Hit
CGGCCCCCCATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTC45460.15135004842469102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)